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Automatic Detection and Segmentation of Kidneys in Magnetic Resonance Images Using Image Processing Techniques

Received: 27 December 2016     Accepted: 12 January 2017     Published: 4 February 2017
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Abstract

Kidney Detection and Segmentation in MR images allows extracting meaningful information for nephrologists, also for practical use in clinical routine, thus we should apply an fast, automatic and robust algorithm. We demonstrate the possibility of construct an algorithm that achieve these requirements. Therefore, a novel kidney segmentation algorithm was created depending on multiple stages. The Region of Interest (ROI) is extracted after we convert the input image to binary one via specific thresholding level yields from K Mean Clustering algorithm. The resulted binary image contain both of kidneys as the biggest regions, so we can isolate them after we calculate the objects areas in labeled image. Finally we can use some morphological operation to remove small objects surrounding the kidney region. The effectiveness of this method is demonstrated through experimental results on complex MR slices. Kidneys were accurately detected and segmented in a few seconds.

Published in Biomedical Statistics and Informatics (Volume 2, Issue 1)
DOI 10.11648/j.bsi.20170201.15
Page(s) 22-26
Creative Commons

This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.

Copyright

Copyright © The Author(s), 2017. Published by Science Publishing Group

Keywords

Automatic Kidney Segmentation, K Mean Clustering, Magnetic Resonance Images MRI

References
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[2] Daw-Tung Lin, "Computer-Aided Kidney Segmentation on Abdominal CT Images", IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE, VOL. 10, NO. 1, 2006.
[3] Moe Myint, Theingi Myint, "Effective Kidney Segmentation Using Gradient Based Approach in Abdominal CT Images", International Conference on Future Computational Technologies, ISBN 978-93-84468-20-0, pp. 130-135, 2015.
[4] A. Reeves and W. Kostis, “Computer-aided diagnosis for lung cancer” Radiologic Clinics of North America, vol. 38, no. 3, pp. 497–509, 2000.
[5] E. L. Chen, P. C. Chung, C. L. Chen, H. M. Tsai, and C. I. Chang, “An automatic diagnostic system for CT liver image classification,” IEEE Trans. Biomed. Eng., vol. 45, no. 6, pp. 783–794, 1998.
[6] Zaid Kraitem and Dr. Mariam Saii, "Automatic Detection and Measurement of Abdominal Circumference in Fetal Ultrasound Images" International Journal of Information Research and Review. Vol. 03, Issue, 03, pp. 1997-2000 March, 2016.
[7] D. Trevathan-Ramirez, “Innovations in breast disease diagnosis,” Radiology Technol., vol. 70, no. 2, pp. 197–203, 1998.
[8] D. T. Lin, C. C. Lei and S. W. Hung, “Computer-aided kidney segmentation on abdominal CT images,” IEEE Transactions on Information Technology in Biomedicine, vol. 10, no. 1, January 2006.
[9] Nir Ailon, Ragesh Jaiswal, and Claire Monteleoni. "Streaming k-means approximation". In NIPS, pages 10-18, 2009.
[10] Stuart P. Lloyd. "Least squares quantization in pcm". IEEE Transactions on Information Theory, Vol. 28, No. 2, PP: 129-137, 1982.
[11] Chris H. Q. Ding and Xiaofeng He. "K-means clustering via principal component analysis". In ICML, 2004.
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[13] Dr. Mariam Saii, Dr. Issa Ibraheem, and Zaid Kraitem. "Auto Measurement and Segmentation of Head Region in Fetal Ultrasound Images". Tishreen University Journal, Syria. ISSN: 2079-3081, Vol. 38, No. 3, 2016.
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  • APA Style

    Mariam Saii, Zaid Kraitem. (2017). Automatic Detection and Segmentation of Kidneys in Magnetic Resonance Images Using Image Processing Techniques. Biomedical Statistics and Informatics, 2(1), 22-26. https://doi.org/10.11648/j.bsi.20170201.15

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    ACS Style

    Mariam Saii; Zaid Kraitem. Automatic Detection and Segmentation of Kidneys in Magnetic Resonance Images Using Image Processing Techniques. Biomed. Stat. Inform. 2017, 2(1), 22-26. doi: 10.11648/j.bsi.20170201.15

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    AMA Style

    Mariam Saii, Zaid Kraitem. Automatic Detection and Segmentation of Kidneys in Magnetic Resonance Images Using Image Processing Techniques. Biomed Stat Inform. 2017;2(1):22-26. doi: 10.11648/j.bsi.20170201.15

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  • @article{10.11648/j.bsi.20170201.15,
      author = {Mariam Saii and Zaid Kraitem},
      title = {Automatic Detection and Segmentation of Kidneys in Magnetic Resonance Images Using Image Processing Techniques},
      journal = {Biomedical Statistics and Informatics},
      volume = {2},
      number = {1},
      pages = {22-26},
      doi = {10.11648/j.bsi.20170201.15},
      url = {https://doi.org/10.11648/j.bsi.20170201.15},
      eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.bsi.20170201.15},
      abstract = {Kidney Detection and Segmentation in MR images allows extracting meaningful information for nephrologists, also for practical use in clinical routine, thus we should apply an fast, automatic and robust algorithm. We demonstrate the possibility of construct an algorithm that achieve these requirements. Therefore, a novel kidney segmentation algorithm was created depending on multiple stages. The Region of Interest (ROI) is extracted after we convert the input image to binary one via specific thresholding level yields from K Mean Clustering algorithm. The resulted binary image contain both of kidneys as the biggest regions, so we can isolate them after we calculate the objects areas in labeled image. Finally we can use some morphological operation to remove small objects surrounding the kidney region. The effectiveness of this method is demonstrated through experimental results on complex MR slices. Kidneys were accurately detected and segmented in a few seconds.},
     year = {2017}
    }
    

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  • TY  - JOUR
    T1  - Automatic Detection and Segmentation of Kidneys in Magnetic Resonance Images Using Image Processing Techniques
    AU  - Mariam Saii
    AU  - Zaid Kraitem
    Y1  - 2017/02/04
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    JF  - Biomedical Statistics and Informatics
    JO  - Biomedical Statistics and Informatics
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    UR  - https://doi.org/10.11648/j.bsi.20170201.15
    AB  - Kidney Detection and Segmentation in MR images allows extracting meaningful information for nephrologists, also for practical use in clinical routine, thus we should apply an fast, automatic and robust algorithm. We demonstrate the possibility of construct an algorithm that achieve these requirements. Therefore, a novel kidney segmentation algorithm was created depending on multiple stages. The Region of Interest (ROI) is extracted after we convert the input image to binary one via specific thresholding level yields from K Mean Clustering algorithm. The resulted binary image contain both of kidneys as the biggest regions, so we can isolate them after we calculate the objects areas in labeled image. Finally we can use some morphological operation to remove small objects surrounding the kidney region. The effectiveness of this method is demonstrated through experimental results on complex MR slices. Kidneys were accurately detected and segmented in a few seconds.
    VL  - 2
    IS  - 1
    ER  - 

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Author Information
  • Department of Computer Engineering, Faculty of Electronic and Electrical Engineering, Tishreen University, Latakia, Syria

  • Department of Computer Engineering, Faculty of Electronic and Electrical Engineering, Tishreen University, Latakia, Syria

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