| Peer-Reviewed

Versatility of RNA-Binding Proteins in Living Cells

Received: 23 July 2019     Accepted: 14 August 2019     Published: 29 August 2019
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Abstract

This conference paper aims at demonstration of complexity or multiplicity of RNA-binding protein (RBP) and its related RNA. The data in the manuscript are based upon the third Annual Meeting of the RNA study group, held at the Tokyo office of the Kyoto University on May 23 in 2019. The purpose of the meeting is to present recent progress of the study group and have discussion regarding RNA and related molecules, especially focusing on RBP in this year. We had fourteen sessions and documented ten of them in the manuscript. There were exciting and fruitful debates. Actual presentations are shown as follows. Specific RBP Sfpq and Qk are involved in neuronal development in mouse system. Also in mouse, liquid- and solid-like RNA granule formation plays pivotal roles in neuronal functions. Biochemical experiments demonstrate that affinity profiles categorize RNA-Binding proteins into distinctive groups. This presents basis for biological divergence of RBPs. In the context of pathology, RNA aptamers against prion and Alzheimer’s diseases may present therapeutic outcome. Computational analysis is another utility for approaching riddle of RBPs. The study of X-chromosome inactivation is pioneering field of long noncoding RNAs. Redundant triplex interactions between lncRNA and LINE-1s are supposed to be crucial in X-chromosome inactivation. Myogenesis-related lncRNA, Myoparr promotes skeletal muscle atrophy caused by denervation through the regulation of GDF5/BMP14 expression. In neurodegenerative disorders functional loss of TLS/FUS induces onset of frontotemporal lobar degeneration. Conformational change of TLS is induced with binding of various nucleic acid molecules. TLS is also involved in phase separation into aggregation to pathogen generation of neurodegenerative diseases. The meeting has been successfully prorogued. We utilize the data to boost the activity of the field of RNA and RBP. The achievements of the meeting have confirmed pivotal roles of RBPs in living cells. It should be in complexity. We will be able to analyze intricate phenomena of RBP biological actions and contribute to uncover the veiled rules in divergent biological programs.

Published in Biomedical Sciences (Volume 5, Issue 1)
DOI 10.11648/j.bs.20190501.12
Page(s) 7-13
Creative Commons

This is an Open Access article, distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium or format, provided the original work is properly cited.

Copyright

Copyright © The Author(s), 2019. Published by Science Publishing Group

Keywords

RNA-Binding Protein, Long Noncoding RNA, Amyotrophic Lateral Sclerosis, TLS FUS, X Chromosome Inactivation, Phase Separation, Neuron, Computer Simulation

References
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Cite This Article
  • APA Style

    Riki Kurokawa, Akihide Takeuchi, Nobuyuki Shiina, Masato Katahira, Takefumi Yamashita, et al. (2019). Versatility of RNA-Binding Proteins in Living Cells. Biomedical Sciences, 5(1), 7-13. https://doi.org/10.11648/j.bs.20190501.12

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    ACS Style

    Riki Kurokawa; Akihide Takeuchi; Nobuyuki Shiina; Masato Katahira; Takefumi Yamashita, et al. Versatility of RNA-Binding Proteins in Living Cells. Biomed. Sci. 2019, 5(1), 7-13. doi: 10.11648/j.bs.20190501.12

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    AMA Style

    Riki Kurokawa, Akihide Takeuchi, Nobuyuki Shiina, Masato Katahira, Takefumi Yamashita, et al. Versatility of RNA-Binding Proteins in Living Cells. Biomed Sci. 2019;5(1):7-13. doi: 10.11648/j.bs.20190501.12

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  • @article{10.11648/j.bs.20190501.12,
      author = {Riki Kurokawa and Akihide Takeuchi and Nobuyuki Shiina and Masato Katahira and Takefumi Yamashita and Yoko Matsuno and Keisuke Hitachi and Shinsuke Ishigaki and Nesreen Haamad and Ryoma Yoneda and Naomi Ueda and Kei Iida and Motoyasu Hosokawa and Masatoshi Hagiwara and Mamiko Iida and Tsukasa Mashima and Yudai Yamaoki and Masatomo So and Takashi Nagata and Gen Sobue and Keiko Kondo and Hiroki Watanabe and Takayuki Uchihashi},
      title = {Versatility of RNA-Binding Proteins in Living Cells},
      journal = {Biomedical Sciences},
      volume = {5},
      number = {1},
      pages = {7-13},
      doi = {10.11648/j.bs.20190501.12},
      url = {https://doi.org/10.11648/j.bs.20190501.12},
      eprint = {https://article.sciencepublishinggroup.com/pdf/10.11648.j.bs.20190501.12},
      abstract = {This conference paper aims at demonstration of complexity or multiplicity of RNA-binding protein (RBP) and its related RNA. The data in the manuscript are based upon the third Annual Meeting of the RNA study group, held at the Tokyo office of the Kyoto University on May 23 in 2019. The purpose of the meeting is to present recent progress of the study group and have discussion regarding RNA and related molecules, especially focusing on RBP in this year. We had fourteen sessions and documented ten of them in the manuscript. There were exciting and fruitful debates. Actual presentations are shown as follows. Specific RBP Sfpq and Qk are involved in neuronal development in mouse system. Also in mouse, liquid- and solid-like RNA granule formation plays pivotal roles in neuronal functions. Biochemical experiments demonstrate that affinity profiles categorize RNA-Binding proteins into distinctive groups. This presents basis for biological divergence of RBPs. In the context of pathology, RNA aptamers against prion and Alzheimer’s diseases may present therapeutic outcome. Computational analysis is another utility for approaching riddle of RBPs. The study of X-chromosome inactivation is pioneering field of long noncoding RNAs. Redundant triplex interactions between lncRNA and LINE-1s are supposed to be crucial in X-chromosome inactivation. Myogenesis-related lncRNA, Myoparr promotes skeletal muscle atrophy caused by denervation through the regulation of GDF5/BMP14 expression. In neurodegenerative disorders functional loss of TLS/FUS induces onset of frontotemporal lobar degeneration. Conformational change of TLS is induced with binding of various nucleic acid molecules. TLS is also involved in phase separation into aggregation to pathogen generation of neurodegenerative diseases. The meeting has been successfully prorogued. We utilize the data to boost the activity of the field of RNA and RBP. The achievements of the meeting have confirmed pivotal roles of RBPs in living cells. It should be in complexity. We will be able to analyze intricate phenomena of RBP biological actions and contribute to uncover the veiled rules in divergent biological programs.},
     year = {2019}
    }
    

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  • TY  - JOUR
    T1  - Versatility of RNA-Binding Proteins in Living Cells
    AU  - Riki Kurokawa
    AU  - Akihide Takeuchi
    AU  - Nobuyuki Shiina
    AU  - Masato Katahira
    AU  - Takefumi Yamashita
    AU  - Yoko Matsuno
    AU  - Keisuke Hitachi
    AU  - Shinsuke Ishigaki
    AU  - Nesreen Haamad
    AU  - Ryoma Yoneda
    AU  - Naomi Ueda
    AU  - Kei Iida
    AU  - Motoyasu Hosokawa
    AU  - Masatoshi Hagiwara
    AU  - Mamiko Iida
    AU  - Tsukasa Mashima
    AU  - Yudai Yamaoki
    AU  - Masatomo So
    AU  - Takashi Nagata
    AU  - Gen Sobue
    AU  - Keiko Kondo
    AU  - Hiroki Watanabe
    AU  - Takayuki Uchihashi
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    JF  - Biomedical Sciences
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    SN  - 2575-3932
    UR  - https://doi.org/10.11648/j.bs.20190501.12
    AB  - This conference paper aims at demonstration of complexity or multiplicity of RNA-binding protein (RBP) and its related RNA. The data in the manuscript are based upon the third Annual Meeting of the RNA study group, held at the Tokyo office of the Kyoto University on May 23 in 2019. The purpose of the meeting is to present recent progress of the study group and have discussion regarding RNA and related molecules, especially focusing on RBP in this year. We had fourteen sessions and documented ten of them in the manuscript. There were exciting and fruitful debates. Actual presentations are shown as follows. Specific RBP Sfpq and Qk are involved in neuronal development in mouse system. Also in mouse, liquid- and solid-like RNA granule formation plays pivotal roles in neuronal functions. Biochemical experiments demonstrate that affinity profiles categorize RNA-Binding proteins into distinctive groups. This presents basis for biological divergence of RBPs. In the context of pathology, RNA aptamers against prion and Alzheimer’s diseases may present therapeutic outcome. Computational analysis is another utility for approaching riddle of RBPs. The study of X-chromosome inactivation is pioneering field of long noncoding RNAs. Redundant triplex interactions between lncRNA and LINE-1s are supposed to be crucial in X-chromosome inactivation. Myogenesis-related lncRNA, Myoparr promotes skeletal muscle atrophy caused by denervation through the regulation of GDF5/BMP14 expression. In neurodegenerative disorders functional loss of TLS/FUS induces onset of frontotemporal lobar degeneration. Conformational change of TLS is induced with binding of various nucleic acid molecules. TLS is also involved in phase separation into aggregation to pathogen generation of neurodegenerative diseases. The meeting has been successfully prorogued. We utilize the data to boost the activity of the field of RNA and RBP. The achievements of the meeting have confirmed pivotal roles of RBPs in living cells. It should be in complexity. We will be able to analyze intricate phenomena of RBP biological actions and contribute to uncover the veiled rules in divergent biological programs.
    VL  - 5
    IS  - 1
    ER  - 

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Author Information
  • Division of Gene Structure and Function, Research Center for Genomic Medicine, Saitama Medical University, Hidaka, Japan

  • Department of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan

  • Laboratory of Neuronal Cell Biology, National Institute for Basic Biology, Okazaki, Japan

  • Institute of Advanced Energy, Kyoto University, Kyoto, Japan

  • Laboratory for Systems Biology and Medicine, Research Center for Advanced Science and Technology, the University of Tokyo, Tokyo, Japan

  • Division of Clinical Preventive Medicine, Niigata University, Niigata, Japan

  • Division for Therapies Against Intractable Diseases, Institute for Comprehensive Medical Science, Fujita Health University, Toyoake, Japan

  • Research Division of Dementia and Neurodegenerative Disease, Nagoya University Graduate School of Medicine, Nagoya, Japan

  • Institute of Advanced Energy, Kyoto University, Kyoto, Japan

  • Division of Gene Structure and Function, Research Center for Genomic Medicine, Saitama Medical University, Hidaka, Japan

  • Division of Gene Structure and Function, Research Center for Genomic Medicine, Saitama Medical University, Hidaka, Japan

  • Department of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan

  • Department of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan

  • Department of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan

  • Institute of Advanced Energy, Kyoto University, Kyoto, Japan

  • Institute of Advanced Energy, Kyoto University, Kyoto, Japan

  • Institute of Advanced Energy, Kyoto University, Kyoto, Japan

  • Institute for Protein Research, Osaka University, Osaka, Japan

  • Institute of Advanced Energy, Kyoto University, Kyoto, Japan

  • Research Division of Dementia and Neurodegenerative Disease, Nagoya University Graduate School of Medicine, Nagoya, Japan

  • Institute of Advanced Energy, Kyoto University, Kyoto, Japan

  • Department of Physics, Nagoya University, Nagoya, Japan

  • Department of Physics, Nagoya University, Nagoya, Japan

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